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[Utility & Helpers](/categories/utility) 4. / 5. tripalcultivate/phenotypes ActiveDrupal-module[Utility & Helpers](/categories/utility) tripalcultivate/phenotypes ========================== A Tripal extension module that provides generic support for large-scale phenotypic data and traits with importers, content pages and visualizations. 4.x-dev(1mo ago)125[10 issues](https://github.com/TripalCultivate/TripalCultivate-Phenotypes/issues)[4 PRs](https://github.com/TripalCultivate/TripalCultivate-Phenotypes/pulls)GPL-3.0-or-laterPHPPHP ^8.2CI passing Since Mar 18Pushed 1mo ago3 watchersCompare [ Source](https://github.com/TripalCultivate/TripalCultivate-Phenotypes)[ Packagist](https://packagist.org/packages/tripalcultivate/phenotypes)[ Docs](https://github.com/TripalCultivate/TripalCultivate-Phenotypes)[ RSS](/packages/tripalcultivate-phenotypes/feed)WikiDiscussions 4.x Synced 1mo ago READMEChangelogDependencies (3)Versions (8)Used By (0) Tripal Cultivate: Phenotypes ============================ [](#tripal-cultivate-phenotypes) **Developed by the University of Saskatchewan, Pulse Crop Bioinformatics team.** **NOTE: This package will replace the following Tripal v3 modules: [Raw Phenotypes](https://github.com/UofS-Pulse-Binfo/rawphenotypes), [AnalyzedPhenotypes](https://github.com/uofs-pulse-binfo/analyzedphenotypes/).** - Creates genus-specific Tripal Content Types for Trait pages to provide a landing page for all information about a specific trait. These are specific to the genus to ensure that all data summarized is relevant and to respect that traits to vary between genus in their expression and specific definition. - Supports using genus-specific ontologies to ensure you capture each trait fully and mapping of these genus-specific terms to domain and system specific ontologies to enable comparison and data sharing. - Focuses on the Trait - Method - Unit formula for describing phenotypic data. - This supports collecting all data for a specific trait (e.g. Plant Height) into a single page while still fully describing methodology and units for accurate analysis. - For the Plant Height trait, you would have data available for multiple experiments, measurement methodology (e.g highest canopy point, average canopy height in a plot, drone captured height based on NDVI) and units on the same page but they would not be combined across experiment, method or units. - A holding space for raw phenotypic data / measurements right after collection which is private by default and sharable with individual accounts. These data are kept outside the main schema for your biological data since they are raw, unpublished results. There is an easy means to backup data, validate and import by season. Citation -------- [](#citation) If you use this module in your Tripal site, please use this citation to reference our work any place where you described your resulting Tripal site. For example, if you publish your site in a journal then this citation should be in the reference section and anywhere functionality provided by this module is discussed in the above text should reference it. > Lacey-Anne Sanderson and Reynold Tan (2023). TripalCultivate Phenotypes: Large-scale trait and phenotypic data integration for Tripal. Development Version. University of Saskatchewan, Pulse Crop Research Group, Saskatoon, SK, Canada. Install ------- [](#install) Using composer, add this package to your Drupal site by using the following command in the root of your Drupal site: ``` composer require tripalcultivate/phenotypes ``` This will download the most recent release in the modules directory. You can see more information in [the Drupal Docs](https://www.drupal.org/docs/develop/using-composer/manage-dependencies). Then you can install it using Drush or the Extensions page on your Drupal site. ``` drush en trpcultivate_phenotypes ``` Technology Stack ---------------- [](#technology-stack) *See specific version compatibility in the automated testing section below.* - Drupal - Tripal 4.x - PostgreSQL - PHP - Apache2 ### Automated Testing [](#automated-testing) This package is dedicated to a high standard of automated testing. We use PHPUnit for testing and QLTY Cloud to ensure good test coverage and maintainability. There are more details on [our QLTY Cloud project page](https://qlty.sh/gh/TripalCultivate/projects/TripalCultivate-Phenotypes) describing our specific maintainability issues and test coverage. [![Maintainability](https://camo.githubusercontent.com/7b0ddd7f73c611bc8fdc478d7ffb0b5a33592cb04bac8ae073ac5b466329f2a6/68747470733a2f2f716c74792e73682f67682f54726970616c43756c7469766174652f70726f6a656374732f54726970616c43756c7469766174652d5068656e6f74797065732f6d61696e7461696e6162696c6974792e737667)](https://qlty.sh/gh/TripalCultivate/projects/TripalCultivate-Phenotypes)[![Code Coverage](https://camo.githubusercontent.com/9de940bc36670020520bc828b42757715599b4478c8c8129a8682a93a2bcad0d/68747470733a2f2f716c74792e73682f67682f54726970616c43756c7469766174652f70726f6a656374732f54726970616c43756c7469766174652d5068656e6f74797065732f636f7665726167652e737667)](https://qlty.sh/gh/TripalCultivate/projects/TripalCultivate-Phenotypes) The following compatibility is proven via automated testing workflows. PHP\\Drupal10.5.x-dev10.6.x-dev11.2.x-dev11.3.x-dev**PHP8.2**[![Grid82-105-Badge](https://github.com/TripalCultivate/TripalCultivate-Phenotypes/actions/workflows/MAIN-phpunit-php8.2_D10_5x.yml/badge.svg)](https://github.com/TripalCultivate/TripalCultivate-Phenotypes/actions/workflows/MAIN-phpunit-php8.2_D10_5x.yml/badge.svg)[![Grid82-106-Badge](https://github.com/TripalCultivate/TripalCultivate-Phenotypes/actions/workflows/MAIN-phpunit-php8.2_D10_6x.yml/badge.svg)](https://github.com/TripalCultivate/TripalCultivate-Phenotypes/actions/workflows/MAIN-phpunit-php8.2_D10_6x.yml/badge.svg)**PHP8.3**[![Grid83-105-Badge](https://github.com/TripalCultivate/TripalCultivate-Phenotypes/actions/workflows/MAIN-phpunit-php8.3_D10_5x.yml/badge.svg)](https://github.com/TripalCultivate/TripalCultivate-Phenotypes/actions/workflows/MAIN-phpunit-php8.3_D10_5x.yml/badge.svg)[![Grid83-106-Badge](https://github.com/TripalCultivate/TripalCultivate-Phenotypes/actions/workflows/MAIN-phpunit-php8.3_D10_6x.yml/badge.svg)](https://github.com/TripalCultivate/TripalCultivate-Phenotypes/actions/workflows/MAIN-phpunit-php8.3_D10_6x.yml/badge.svg)[![Grid83-112-Badge](https://github.com/TripalCultivate/TripalCultivate-Phenotypes/actions/workflows/MAIN-phpunit-php8.3_D11_2x.yml/badge.svg)](https://github.com/TripalCultivate/TripalCultivate-Phenotypes/actions/workflows/MAIN-phpunit-php8.3_D11_2x.yml/badge.svg)[![Grid83-113-Badge](https://github.com/TripalCultivate/TripalCultivate-Phenotypes/actions/workflows/MAIN-phpunit-php8.3_D11_3x.yml/badge.svg)](https://github.com/TripalCultivate/TripalCultivate-Phenotypes/actions/workflows/MAIN-phpunit-php8.3_D11_3x.yml/badge.svg)**PHP8.4**[![Grid84-105-Badge](https://github.com/TripalCultivate/TripalCultivate-Phenotypes/actions/workflows/MAIN-phpunit-php8.4_D10_5x.yml/badge.svg)](https://github.com/TripalCultivate/TripalCultivate-Phenotypes/actions/workflows/MAIN-phpunit-php8.4_D10_5x.yml/badge.svg)[![Grid84-106-Badge](https://github.com/TripalCultivate/TripalCultivate-Phenotypes/actions/workflows/MAIN-phpunit-php8.4_D10_6x.yml/badge.svg)](https://github.com/TripalCultivate/TripalCultivate-Phenotypes/actions/workflows/MAIN-phpunit-php8.4_D10_6x.yml/badge.svg)[![Grid84-112-Badge](https://github.com/TripalCultivate/TripalCultivate-Phenotypes/actions/workflows/MAIN-phpunit-php8.4_D11_2x.yml/badge.svg)](https://github.com/TripalCultivate/TripalCultivate-Phenotypes/actions/workflows/MAIN-phpunit-php8.4_D11_2x.yml/badge.svg)[![Grid84-113-Badge](https://github.com/TripalCultivate/TripalCultivate-Phenotypes/actions/workflows/MAIN-phpunit-php8.4_D11_3x.yml/badge.svg)](https://github.com/TripalCultivate/TripalCultivate-Phenotypes/actions/workflows/MAIN-phpunit-php8.4_D11_3x.yml/badge.svg)**PHP8.5**[![Grid85-113-Badge](https://github.com/TripalCultivate/TripalCultivate-Phenotypes/actions/workflows/MAIN-phpunit-php8.5_D11_3x.yml/badge.svg)](https://github.com/TripalCultivate/TripalCultivate-Phenotypes/actions/workflows/MAIN-phpunit-php8.5_D11_3x.yml/badge.svg) ### Health Score 34 — LowBetter than 77% of packages Maintenance71 Regular maintenance activity Popularity9 Limited adoption so far Community13 Small or concentrated contributor base Maturity37 Early-stage or recently created project Bus Factor1 Top contributor holds 50.4% of commits — single point of failure How is this calculated?**Maintenance (25%)** — Last commit recency, latest release date, and issue-to-star ratio. Uses a 2-year decay window. **Popularity (30%)** — Total and monthly downloads, GitHub stars, and forks. Logarithmic scaling prevents top-heavy scores. **Community (15%)** — Contributors, dependents, forks, watchers, and maintainers. Measures real ecosystem engagement. **Maturity (30%)** — Project age, version count, PHP version support, and release stability. ### Release Activity Cadence Unknown Total 1 Last Release 53d ago ### Community Maintainers ![](https://www.gravatar.com/avatar/4083b15618278dd53dc26863d5c81888ac49acca3850166f8b3e0cac18ff611b?d=identicon)[uofs-pulse-binfo](/maintainers/uofs-pulse-binfo) --- Top Contributors [![reynoldtan](https://avatars.githubusercontent.com/u/15472253?v=4)](https://github.com/reynoldtan "reynoldtan (844 commits)")[![laceysanderson](https://avatars.githubusercontent.com/u/1566301?v=4)](https://github.com/laceysanderson "laceysanderson (390 commits)")[![carolyncaron](https://avatars.githubusercontent.com/u/7927760?v=4)](https://github.com/carolyncaron "carolyncaron (375 commits)")[![vidu-wil](https://avatars.githubusercontent.com/u/132868285?v=4)](https://github.com/vidu-wil "vidu-wil (66 commits)") --- Tags phenotypic-datatraitstripaltripal4tripalcultivatedrupaldata-importvisualizationtripalbiological-dataphenotypic-data ### Embed Badge ![Health badge](/badges/tripalcultivate-phenotypes/health.svg) ``` [![Health](https://phpackages.com/badges/tripalcultivate-phenotypes/health.svg)](https://phpackages.com/packages/tripalcultivate-phenotypes) ``` ### Alternatives [tripal/tripal Tripal is a toolkit to facilitate construction of online genomic, genetic (and other biological) websites. 709.9k9](/packages/tripal-tripal) PHPackages © 2026 [Directory](/)[Categories](/categories)[Trending](/trending)[Changelog](/changelog)[Analyze](/analyze)